12.000 years after the war against the Shadow Angels, Amata Sora spends his days on a movie theater until he meets and befriends a girl his age called Mikono Suzushiro. When a mysterious invading force from the planet Altair called the "Abductors" led by Kagura Demuri attacks, Amata and Mikono find themselves in danger, until Amata activates his hidden levitation power and unlocks the sealed power of Aquarion to form Aquarion Evol.